PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G139900.1
Common NameB456_005G139900, LOC105794180
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 94aa    MW: 10648 Da    PI: 9.3344
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G139900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.41e-0719591454
                        HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        d+i +  ++L+ l+P++ + +  K+s + +L+++++YI+sL
  Gorai.005G139900.1 19 DQITDLVSKLQHLIPELRRRRFDKVSTSKVLQETCNYIRSL 59
                        6899999*********87999999***************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.15559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-51959IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.13E-81976IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-91973IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MSGRRSRSKQ SSVSSITDDQ ITDLVSKLQH LIPELRRRRF DKVSTSKVLQ ETCNYIRSLH  60
REVEDLSDRL SQLLASTDSD SDQAAIIRSL LMQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478675.16e-59PREDICTED: transcription factor PRE6-like
SwissprotQ8GW327e-40PRE6_ARATH; Transcription factor PRE6
TrEMBLA0A0D2SGN67e-59A0A0D2SGN6_G
STRINGVIT_01s0026g02030.t017e-41(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.17e-41bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]